The rapid autonomous fragment test (RAFT) identifies AFUs based on analysis of inter-residue contacts present in the three-dimensional structure of a protein.
Rapid autonomous fragment test (RAFT) calculation. As described in detail by Fischer & Marqusee, 12 the RAFT algorithm first identifies all inter-residue contacts...
used the RAFT (rapid autonomous fragment test)12 algorithm for prediction of continuous autonomous folding units (for details, see Materials and Methods).
A representative library of protein structures previously assembled for use in the rapid autonomous fragment test library was scanned for suitable candidates. The...