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What does PAC stand for?

PAC stands for Phylogenetics Analysis Computer

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Usually the comparison involves more than just two sequences, meaning that a multiple alignment is required. This can rarely be done effectively with pen and paper so, as in all steps in a phylogenetic analysis, a computer program is used. For multiple alignments, Clustal is often the most popular choice (Jeanmougin et al. , 1998). Clustal and other software packages for phylogenetic analysis are described in Technical Note 16.