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What does MAF stand for?

MAF stands for Multiple Alignment Format

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CentroidAlign-Web: A Fast and Accurate Multiple Aligner for Long Non-Coding RNAs; The resulting format is multiple alignment format (MAF) or clustalW.
hmmalign - align sequences to an HMM profile SYNOPSIS hmmalign [options] hmmfile seqfile; If it is in a multiple alignment format (e.g. Stockholm...
Recent, I was asked to sort a MAF (Multiple Alignment Format) file containing genomic alignments. This was a large vertebrate alignment file and the researchers were...
Genetic polymorphism in the NRF2 gene as a prognosis marker for cancer chemotherapy; to the transcription factors of NRF2/small multiple alignment format...
statistics format used by PHAST), "MPM" (format used by MultiPipMaker), "LAV" (used by blastz), or "MAF" (Multiple Alignment Format used by MULTIZ and TBA...
MPM is the format used by the MultiPipMaker aligner and some other of Webb Miller's older tools. MAF ("Multiple Alignment Format") is used by...
MAF (Multiple Alignment Format) MAF (Mutation Annotation Format); Indexing: IGV requires that both SAM and BAM files be sorted by position and indexed...
mafTools - Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
The Smith-Waterman algorithm is a member of the class of algorithms that can calculate the; The available multiple alignment format names are: multiple, simple...
This format is not to be confused with the UCSC Multiple Alignment Format MAF); As with trace ID-to-sample relationship files, mutation annotation format...
A command-line driven program written in C++ that enables the processing of genome alignments stored in the Multiple Alignment Format in an efficient and extensible...
Microsoft WORD format is not a sequence format. Sequences can be read and written in a variety of formats; ClustalW ALN (multiple alignment) format.
Multiple alignment format. STAMP alignment output consists first of a list of domain descriptions and relevant transformations. After this an alignment may or may not...
Multiple Alignment Format (MAF) produced by Multiz. Used to store whole-genome alignments, such as the 30-way alignments available from the UCSC genome browser.
ENCODE Project at UCSC: Data Submission; The multiple alignment format stores a series of multiple alignments in a format that is easy to parse and...
IGV; LOH; MAF (Multiple Alignment Format) MAF (Mutation Annotation Format) Merged BAM File; MUT; IGV provides several features for working with paired-end alignments.
Multiple Alignment Format sequence input stream; / Bio::AlignIO::maf. 10 Jul 2014 20:22:23 GMT; Module version: 1.006924
problem '.' characters in multiple alignment format (MAF) Bioinformatics; You are currently viewing the SEQanswers forums as a guest, which limits your access.
The multiple alignment format stores a series of multiple alignments in a format that is easy to parse and relatively easy to read.
Input format: fasta This refers to the input FASTA file format introduced for Bill Pearson's FASTA tool; nexus The NEXUS multiple alignment format...
Clustalw multiple alignment format; Most sequence formats have records for descriptions, annotations and comments provided with the sequence.
The multiple alignment format stores a series of multiple alignments in a format that is easy to parse and relatively easy to read. This format...
is a command-line driven program written in C++ that enables the processing of genome alignments stored in the Multiple Alignment Format in an efficient and...
Can you please specify whether it is the Multiple Alignment Format or the Mutation Annotation Format that you are interested in.
This document describes installation and usage of the LASTZ sequence alignment program; MAF is a multiple alignment format developed at UCSC.
The multiple alignment format stores a series of multiple alignments in a format that is easy to parse and relatively easy to read. This format stores...
IGV; LOH; MAF (Multiple Alignment Format) MAF (Mutation Annotation Format) Merged BAM File; MUT; IGV displays the a window where you enter the information.
GCG MSF: www.bioperl.org/wiki/MSF multiple alignment format Fasta is generally the easiest format to read, write, parse and edit. A simple example is given here...
The Multiple Alignment Format stores a series of multiple alignments. See the UCSC web site for more details. The extension must be ".maf". IGV will create an index...
ClustalW multiple alignment format. From BioPerl; CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting...
DEFINITION. The multiple alignment format stores a series of multiple alignments in a format that is easy to parse and relatively easy to read. This format stores...
Output from SCANS Up: Input and Output format Previous: Sequence format Multiple alignment format. STAMP alignment output consists first of a list of domain...
PHYLIP multiple alignment format. From BioPerl. Jump to: navigation, search. Description. Format for Joe Felsenstein's phylogenetic applications.
The multiple alignment format stores a series of multiple alignments in a format that is easy to;.2bit format : A.2bit file stores multiple DNA...
Multiple alignment files are used for storing and sharing genome comparison data. They are typically written in the Multiple Alignment Format (MAF, see Figure 1D...